psjshep,

Yes, it's not on 3rdparty building script.
I managed this (on raspbian) with following (as root, adapt with 'sudo' if you need):

ps: I cloned git repository in my home directory.

# build libatik

cd ~/indi/3rdparty/
mkdir build_libatik
cd build_libatik
cmake -DCMAKE_INSTALL_PREFIX=/usr . ../libatik
make
make install
# build driver

cd ~/indi/3rdparty/indi-atik/
mkdir build 
cd build 
cmake -DCMAKE_INSTALL_PREFIX=/usr .. 
make 
make install


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