You only need to disconnect your imaging camera. Mount, focuser & filter wheel can be simultaneously connected in FireCapture. Obviously if you ask both Ekos and FireCapture to perform conflicting actions it will get in a mess - ie don't use Ekos guiding and FireCapture guiding at the same time.

Personally I don't have a filter wheel or auto focuser but for guiding I can select my INDI connected mount in FireCapture, I assume the other devices work in a similar manner.

I'd be interested to know what fps you get from which camera with what resolution when using the RPi 5.

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